CDS

Accession Number TCMCG057C53991
gbkey CDS
Protein Id XP_018459888.1
Location 5180..6106
Gene LOC108830812
GeneID 108830812
Organism Raphanus sativus

Protein

Length 308aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018604386.1
Definition PREDICTED: probable E3 ubiquitin-protein ligase RHC1A [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category O
Description E3 ubiquitin-protein ligase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
ko04131        [VIEW IN KEGG]
KEGG_ko ko:K11982        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000209        [VIEW IN EMBL-EBI]
GO:0000820        [VIEW IN EMBL-EBI]
GO:0001101        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006508        [VIEW IN EMBL-EBI]
GO:0006511        [VIEW IN EMBL-EBI]
GO:0006521        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006970        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009414        [VIEW IN EMBL-EBI]
GO:0009415        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010035        [VIEW IN EMBL-EBI]
GO:0010498        [VIEW IN EMBL-EBI]
GO:0010565        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0019941        [VIEW IN EMBL-EBI]
GO:0030104        [VIEW IN EMBL-EBI]
GO:0030163        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0033238        [VIEW IN EMBL-EBI]
GO:0033239        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042592        [VIEW IN EMBL-EBI]
GO:0043161        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044257        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0045763        [VIEW IN EMBL-EBI]
GO:0047484        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048878        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051603        [VIEW IN EMBL-EBI]
GO:0061630        [VIEW IN EMBL-EBI]
GO:0061659        [VIEW IN EMBL-EBI]
GO:0062012        [VIEW IN EMBL-EBI]
GO:0062014        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0080134        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901565        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1902005        [VIEW IN EMBL-EBI]
GO:1902006        [VIEW IN EMBL-EBI]
GO:2000070        [VIEW IN EMBL-EBI]
GO:2000214        [VIEW IN EMBL-EBI]
GO:2000215        [VIEW IN EMBL-EBI]
GO:2000282        [VIEW IN EMBL-EBI]
GO:2000283        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCTAGTGGTCGAAACACTCACTGGTGTCACAGATGTCAACGTGGTGTCTTCCTTCGTGGTAGAGACTCTCTCTGTCCCTATTGTGGAGGAGGGTTTGTCGAAGAAATCGATGTAACGCCTCATAGTAGCACCTTAGATATGCTTAGAGCTCACAGAGATGTTGAGCGTGATCCAACGTTTGATCTCGTTGAAGCTTTCTCAGCTTTTATGAGAAGCCGTTTAGCTGACAGAGAACTAACCGGAAGACTTGGTGGATCTGGTCGTTCTGAAAGCTTCTCAAGTATAGCTCCTTTCTTGATCTTTAGTGGCCAAGCTAATAATAATAATAGTTCAGTCGAAGCGTTACTCAACGGGTCACCTGCCATTGGTATCACTAGTGGCAACACCAATGCTGGAGATTACTTCTACGGACCAGGTCTTGAAGAACTGATTGAGCAGCTTTCATCGGGGACTAGTCACCATAGAGGTCCACCACCTGCAGCAAAATCATCTATTGATTCATTACCAACCATAAAGATCACACAGAAGCATCTCAAGTCGTCAGACTCTCACTGTCCGGTTTGCAAAGACGAGTTTGAGTTGAAGTCGGAAGCAAAACAGATGCCGTGTAAACATGTATATCATTCTGACTGCATTGTCCCTTGGCTGGTTCAGCATAACACATGCCCGGTTTGTCGTAAGGAGTTACCATCAGGAGGATCGTCTTCAAGTGCACAGAGTGATCAGAACAGAAGCACGAATAGAAGAAGGAATATTTTCTCTAGTCTCTGGCCATTCCGCTCGTCTAGCTCAAGCTCTACACATAACCGCAGAGACACAAACAATACAGCCGTTGCTGAAGAAGGCCAATATAATCATCATCACCAACAACATCATCAACAACAATCCAATAGGGGTTATAGTGGTTGGCCTTTTGACTATTAA
Protein:  
MSSGRNTHWCHRCQRGVFLRGRDSLCPYCGGGFVEEIDVTPHSSTLDMLRAHRDVERDPTFDLVEAFSAFMRSRLADRELTGRLGGSGRSESFSSIAPFLIFSGQANNNNSSVEALLNGSPAIGITSGNTNAGDYFYGPGLEELIEQLSSGTSHHRGPPPAAKSSIDSLPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCKHVYHSDCIVPWLVQHNTCPVCRKELPSGGSSSSAQSDQNRSTNRRRNIFSSLWPFRSSSSSSTHNRRDTNNTAVAEEGQYNHHHQQHHQQQSNRGYSGWPFDY